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1.
Int J Mol Sci ; 25(5)2024 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-38474138

RESUMO

Antithrombin (AT) is the major plasma inhibitor of thrombin (FIIa) and activated factor X (FXa), and antithrombin deficiency (ATD) is one of the most severe thrombophilic disorders. In this study, we identified nine novel AT mutations and investigated their genotype-phenotype correlations. Clinical and laboratory data from patients were collected, and the nine mutant AT proteins (p.Arg14Lys, p.Cys32Tyr, p.Arg78Gly, p.Met121Arg, p.Leu245Pro, p.Leu270Argfs*14, p.Asn450Ile, p.Gly456delins_Ala_Thr and p.Pro461Thr) were expressed in HEK293 cells; then, Western blotting, N-Glycosidase F digestion, and ELISA were used to detect wild-type and mutant AT. RT-qPCR was performed to determine the expression of AT mRNA from the transfected cells. Functional studies (AT activity in the presence and in the absence of heparin and heparin-binding studies with the surface plasmon resonance method) were carried out. Mutations were also investigated by in silico methods. Type I ATD caused by altered protein synthesis (p.Cys32Tyr, p.Leu270Argfs*14, p.Asn450Ile) or secretion disorder (p.Met121Arg, p.Leu245Pro, p.Gly456delins_Ala_Thr) was proved in six mutants, while type II heparin-binding-site ATD (p.Arg78Gly) and pleiotropic-effect ATD (p.Pro461Thr) were suggested in two mutants. Finally, the pathogenic role of p.Arg14Lys was equivocal. We provided evidence to understand the pathogenic nature of novel SERPINC1 mutations through in vitro expression studies.


Assuntos
Deficiência de Antitrombina III , Antitrombinas , Humanos , Antitrombinas/química , Células HEK293 , Anticoagulantes , Heparina/metabolismo , Mutação , Deficiência de Antitrombina III/genética
2.
Medicine (Baltimore) ; 103(2): e36849, 2024 Jan 12.
Artigo em Inglês | MEDLINE | ID: mdl-38215083

RESUMO

Unusual blood clots can cause serious health problems, such as lung embolism, stroke, and heart attack. Inhibiting thrombin activity was adopted as an effective strategy for preventing blood clots. In this study, we explored computational-based method for designing peptide inhibitors of human thrombin therapeutic peptides to prevent platelet aggregation. The random peptides and their 3-dimentional structures were generated to build a virtual peptide library. The generated peptides were docked into the binding pocket of human thrombin. The designed strong binding peptides were aligned with the native binder by comparative study, and we showed the top 5 peptide binders display strong binding affinity against human thrombin. The 5 peptides were synthesized and validated their inhibitory activity. Our result showed the 5-mer peptide AEGYA, EVVNQ, and FASRW with inhibitory activity against thrombin, range from 0.53 to 4.35 µM. In vitro anti-platelet aggregation assay was carried out, suggesting the 3 peptides can inhibit the platelet aggregation induced by thrombin. This study showed computer-aided peptide inhibitor design can be a robust method for finding potential binders for thrombin, which provided solutions for anticoagulation.


Assuntos
Antitrombinas , Trombina , Trombose , Humanos , Anticoagulantes/farmacologia , Plaquetas/metabolismo , Peptídeos/farmacologia , Peptídeos/metabolismo , Agregação Plaquetária , Inibidores da Agregação Plaquetária/farmacologia , Trombina/metabolismo , Antitrombinas/química , Antitrombinas/farmacologia
3.
Blood Coagul Fibrinolysis ; 35(2): 43-48, 2024 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-38179715

RESUMO

Antithrombin is an essential protein that acts as a natural anticoagulant in the human body. It is synthesized by the liver and belongs to the serine protease inhibitors, which are commonly referred to as the SERPINS superfamily. The antithrombin molecule comprises 432 amino acids and has a molecular weight of approximately 58 200 D. It consists of three domains, including an amino-terminal domain, a carbohydrate-rich domain, and a carboxyl-terminal domain. The amino-terminal domain binds with heparin, whereas the carboxyl-terminal domain binds with serine protease. Antithrombin is a crucial natural anticoagulant that contributes approximately 60-80% of plasma anticoagulant activities in the human body. Moreover, antithrombin has anti-inflammatory effects that can be divided into coagulation-dependent and coagulation-independent effects. Furthermore, it exhibits antitumor activity and possesses a broad range of antiviral properties. Inherited type I antithrombin deficiency is a quantitative disorder that is characterized by low antithrombin activity due to low plasma levels. On the other hand, inherited type II antithrombin deficiency is a qualitative disorder that is characterized by defects in the antithrombin molecule. Acquired antithrombin deficiencies are more common than hereditary deficiencies and are associated with various clinical conditions due to reduced synthesis, increased loss, or enhanced consumption. The purpose of this review was to provide an update on the structure, functions, clinical implications, and methods of detection of antithrombin.


Assuntos
Deficiência de Antitrombina III , Antitrombinas , Humanos , Antitrombinas/uso terapêutico , Antitrombinas/química , Antitrombina III , Anticoagulantes , Heparina , Coagulação Sanguínea , Deficiência de Antitrombina III/tratamento farmacológico
4.
Sci Rep ; 13(1): 16734, 2023 10 04.
Artigo em Inglês | MEDLINE | ID: mdl-37794095

RESUMO

Antithrombin (AT) deficiency increases the risk for venous thromboembolism, therefore, a highly sensitive assay to identify this condition is crucial. The aim of this paper was to perform a meta-analysis comparing AT activities measured by different AT activity assays in patients with heparin binding site AT deficiency. In addition, the diagnostic sensitivity of selected assays was compared depending on the available data. An extensive literature search was performed considering results with publication date up to July 10, 2021. Seven relevant English-language observational studies, comparing AT activity measured by different AT activity assays in Caucasian Europeans with either the AT Budapest III or AT Padua I mutation were included in meta-analyses. There was no significant difference in AT activity between Labexpert and Innovance in patients with AT Budapest III (P = 0.567) and AT Padua I (P = 0.265), while AT activity determined by HemosIL was significantly higher compared to Innovance for both mutations (AT Budapest III: P < 0.001; AT Padua I: P < 0.001). These results are in line with the results of comparison of diagnostic sensitivity. In patients with AT Budapest III, the AT activity was also higher when measured with Berichrom compared to Innovance (P = 0.002), however, the results of comparison of diagnostic sensitivity across studies were variable. No significant difference (P = 0.117) in AT activity as well as diagnostic sensitivity was observed between Sta-Stachrom and Innovance. The results of our study suggest that Innovance, Labexpert and Sta-Stachrom are the most sensitive activity assays for detection of AT Budapest III and AT Padua I, whereas HemosIL showed considerably lower sensitivity for these two variants. As revealed in our study, the diagnostic sensitivity of AT activity assays to type II heparin binding site AT deficiency is different, and in some assays mutation dependent.


Assuntos
Deficiência de Antitrombina III , Heparina , Humanos , Heparina/metabolismo , Anticoagulantes , Testes de Coagulação Sanguínea/métodos , Deficiência de Antitrombina III/diagnóstico , Deficiência de Antitrombina III/genética , Sítios de Ligação , Antitrombinas/química
5.
Biomolecules ; 13(5)2023 05 06.
Artigo em Inglês | MEDLINE | ID: mdl-37238665

RESUMO

The interaction between coagulation factors Xa and IXa and the activated state of their inhibitor, antithrombin (AT),have been investigated using X-ray diffraction studies. However, only mutagenesis data are available for non-activated AT. Our aim was to propose a model based on docking and advanced-sampling molecular dynamics simulations that can reveal the conformational behavior of the systems when AT is not binding a pentasaccharide. We built the initial structure for non-activated AT-FXa and AT-FIXa complexes using HADDOCK 2.4. The conformational behavior was studied using Gaussian accelerated molecular dynamics simulations. In addition to the docked complexes, two systems based on the X-ray structures were also simulated, with and without the ligand. The simulations revealed large variability in conformation for both factors. In the docking-based complex of AT-FIXa, conformations with stable Arg150-AT interactions can exist for longer time periods but the system also has a higher tendency for reaching states with very limited interaction with the "exosite" of AT. By comparing simulations with or without the pentasaccharide, we were able to gain insights into the effects of conformational activation on the Michaelis complexes. RMSF analysis and correlation calculations for the alpha-carbon atoms revealed important details of the allosteric mechanisms. Our simulations provide atomistic models for better understanding the conformational activation mechanism of AT against its target factors.


Assuntos
Antitrombinas , Fator Xa , Antitrombinas/química , Antitrombinas/metabolismo , Fator Xa/química , Fator Xa/metabolismo , Heparina/química , Simulação de Dinâmica Molecular , Conformação Proteica , Antitrombina III/química , Oligossacarídeos , Cinética
6.
Anal Biochem ; 668: 115088, 2023 05 01.
Artigo em Inglês | MEDLINE | ID: mdl-36878338

RESUMO

Antithrombin is a key protein of the coagulation system belonging to the serine protease inhibitor family. Antithrombin preparations are used as a therapeutic treatment for patients with decreased antithrombin activity. Elucidating the structural features of this protein is an important part of the control strategy to assure a high quality. This study presents an ion exchange chromatographic method coupled to mass spectrometry capable of characterizing antithrombin post-translational modifications such as N-glycosylation, phosphorylation or deamidation. Furthermore, the method was successfully used to evidence irreversible/inactive conformers of antithrombin which are commonly observed for serine protease inhibitors and referred to as latent forms.


Assuntos
Antitrombinas , Inibidores de Serino Proteinase , Humanos , Antitrombinas/química , Antitrombinas/metabolismo , Isoformas de Proteínas , Espectrometria de Massas/métodos , Cromatografia por Troca Iônica/métodos
7.
Biointerphases ; 17(2): 021005, 2022 04 27.
Artigo em Inglês | MEDLINE | ID: mdl-35477241

RESUMO

Biomaterials used for blood contacting devices are inherently thrombogenic. Antithrombotic agents can be used as surface modifiers on biomaterials to reduce thrombus formation on the surface and to maintain device efficacy. For quality control and to assess the effectiveness of immobilization strategies, it is necessary to quantify the surface-immobilized antithrombotic agent directly. There are limited methods that allow direct quantification on device surfaces such as catheters. In this study, an enzyme immunoassay (EIA) has been developed to measure the density of a synthetic antithrombin-heparin (ATH) covalent complex immobilized on a catheter surface. The distribution of the immobilized ATH was further characterized by an immunohistochemical assay. This analyte-specific EIA is relatively simple and has high throughput, thus providing a tool for quantitative analysis of biomaterial surface modifications. These methods may be further modified to evaluate plasma proteins adsorbed and immobilized on various biomaterial surfaces of complex shapes, with a range of bioactive functionalities, as well as to assess conformational changes of proteins using specific antibodies.


Assuntos
Heparina , Proteínas de Membrana , Antitrombinas/química , Materiais Biocompatíveis , Fibrinolíticos , Heparina/química , Proteínas Imobilizadas , Propriedades de Superfície
8.
Molecules ; 26(23)2021 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-34885877

RESUMO

In this study; a spectrum-effect relationship analysis combined with a high-performance liquid chromatography-mass spectrometry (LC-MS) analysis was established to screen and identify active components that can inhibit thrombin and factor Xa (THR and FXa) in Salviae Miltiorrhizae Radix et Rhizoma-Chuanxiong Rhizoma (Danshen-Chuanxiong) herbal pair. Ten potential active compounds were predicted through a canonical correlation analysis (CCA), and eight of them were tentatively identified through an LC-MS analysis. Furthermore; the enzyme inhibitory activity of six available compounds; chlorogenic acid; Z-ligustilide; caffeic acid; ferulic acid; tanshinone I and tanshinone IIA; were tested to verify the feasibility of the method. Among them; chlorogenic acid was validated to possess a good THR inhibitory activity with IC50 of 185.08 µM. Tanshinone I and tanshinone IIA are potential FXa inhibitors with IC50 of 112.59 µM and 138.19 µM; respectively. Meanwhile; molecular docking results show that tanshinone I and tanshinone IIA; which both have binding energies of less than -7.0 kcal·mol-1; can interact with FXa by forming H-bonds with residues of SER214; GLY219 and GLN192. In short; the THR and FXa inhibitors in the Danshen-Chuanxiong herbal pair have been successfully characterized through a spectrum-effect relationship analysis and an LC-MS analysis.


Assuntos
Antitrombinas/farmacologia , Medicamentos de Ervas Chinesas/farmacologia , Inibidores do Fator Xa/farmacologia , Trombina/antagonistas & inibidores , Antitrombinas/química , Avaliação Pré-Clínica de Medicamentos , Medicamentos de Ervas Chinesas/química , Inibidores do Fator Xa/química , Humanos , Simulação de Acoplamento Molecular , Salvia miltiorrhiza/química
9.
Chem Commun (Camb) ; 57(83): 10923-10926, 2021 Oct 19.
Artigo em Inglês | MEDLINE | ID: mdl-34596182

RESUMO

Tyrosine sulfation is an important post-translational modification of peptides and proteins which underpins and modulates many protein-protein interactions. In order to overcome the inherent instability of the native modification, we report the synthesis of two sulfonate analogues and their incorporation into two thrombin-inhibiting sulfopeptides. The effective mimicry of these sulfonate analogues for native sulfotyrosine was validated in the context of their thrombin inhibitory activity and binding mode, as determined by X-ray crystallography.


Assuntos
Antitrombinas/química , Peptídeos/química , Trombina/antagonistas & inibidores , Tirosina/análogos & derivados , Antitrombinas/síntese química , Antitrombinas/metabolismo , Cristalografia por Raios X , Ensaios Enzimáticos , Humanos , Peptídeos/síntese química , Peptídeos/metabolismo , Ligação Proteica , Trombina/metabolismo , Tirosina/química
10.
J Biol Chem ; 297(5): 101322, 2021 11.
Artigo em Inglês | MEDLINE | ID: mdl-34688666

RESUMO

The salivary glands of the flea Xenopsylla cheopis, a vector of the plague bacterium, Yersinia pestis, express proteins and peptides thought to target the hemostatic and inflammatory systems of its mammalian hosts. Past transcriptomic analyses of salivary gland tissue revealed the presence of two similar peptides (XC-42 and XC-43) having no extensive similarities to any other deposited sequences. Here we show that these peptides specifically inhibit coagulation of plasma and the amidolytic activity of α-thrombin. XC-43, the smaller of the two peptides, is a fast, tight-binding inhibitor of thrombin with a dissociation constant of less than 10 pM. XC-42 exhibits similar selectivity as well as kinetic and binding properties. The crystal structure of XC-43 in complex with thrombin shows that despite its substrate-like binding mode, XC-43 is not detectably cleaved by thrombin and that it interacts with the thrombin surface from the enzyme catalytic site through the fibrinogen-binding exosite I. The low rate of hydrolysis was verified in solution experiments with XC-43, which show the substrate to be largely intact after 2 h of incubation with thrombin at 37 °C. The low rate of XC-43 cleavage by thrombin may be attributable to specific changes in the catalytic triad observable in the crystal structure of the complex or to extensive interactions in the prime sites that may stabilize the binding of cleavage products. Based on the increased arterial occlusion time, tail bleeding time, and blood coagulation parameters in rat models of thrombosis XC-43 could be valuable as an anticoagulant.


Assuntos
Anticoagulantes/química , Antitrombinas/química , Proteínas de Insetos/química , Glândulas Salivares/química , Proteínas e Peptídeos Salivares/química , Trombina , Xenopsylla/química , Animais , Humanos , Ratos , Trombina/antagonistas & inibidores , Trombina/química , Xenopsylla/metabolismo
11.
J Mater Chem B ; 9(36): 7409-7422, 2021 09 22.
Artigo em Inglês | MEDLINE | ID: mdl-34551061

RESUMO

Cardiovascular disease (CVD) poses serious health concerns worldwide. The lack of transplantable vascular grafts is an unmet clinical need in the surgical treatment of CVD. Although expanded polytetrafluoroethylene (ePTFE) vascular grafts have been used in clinical practice, a low long-term patency rate in small-diameter transplantation application is still the biggest challenge. Thus, surface modification of ePTFE is sought after. In this study, polydopamine (PDA) was used to improve the hydrophilia and provide immobilization sites in ePTFE. Bivalirudin (BVLD), a direct thrombin inhibitor, was used to enhance the anti-thrombotic activity of ePTFE. The peptides derived from extracellular matrix proteins were used to elevate the bioactivity of ePTFE. The morphology, chemical composition, peptide modified strength, wettability, and hemocompatibility of modified ePTFE vascular grafts were investigated. Then, an endothelial cell proliferation assay was used to evaluate the best co-modification strategy of the ePTFE vascular graft in vitro. Since a large animal could relatively better mimic human physiology, we chose a porcine carotid artery replacement model in the current study. The results showed that the BVLD/REDV co-modified ePTFE vascular grafts had a satisfactory patency rate (66.7%) and a higher endothelial cell coverage ratio (70%) at 12 weeks after implantation. This may offer an opportunity to produce a multi-biofunctional ePTFE vascular graft, thereby yielding a potent product to meet the clinical needs.


Assuntos
Prótese Vascular , Materiais Revestidos Biocompatíveis/química , Politetrafluoretileno/química , Animais , Antitrombinas/química , Antitrombinas/uso terapêutico , Artérias Carótidas/patologia , Artérias Carótidas/cirurgia , Lesões das Artérias Carótidas/terapia , Proliferação de Células/efeitos dos fármacos , Materiais Revestidos Biocompatíveis/farmacologia , Materiais Revestidos Biocompatíveis/uso terapêutico , Modelos Animais de Doenças , Células Endoteliais/citologia , Células Endoteliais/metabolismo , Hirudinas/química , Indóis/química , Masculino , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/uso terapêutico , Polímeros/química , Proteínas Recombinantes/química , Proteínas Recombinantes/uso terapêutico , Suínos , Porco Miniatura , Trombose/tratamento farmacológico , Molhabilidade
12.
Cell Chem Biol ; 28(12): 1728-1739.e5, 2021 12 16.
Artigo em Inglês | MEDLINE | ID: mdl-34352225

RESUMO

Aberrant protein citrullination is associated with many pathologies; however, the specific effects of this modification remain unknown. We have previously demonstrated that serine protease inhibitors (SERPINs) are highly citrullinated in rheumatoid arthritis (RA) patients. These citrullinated SERPINs include antithrombin, antiplasmin, and t-PAI, which regulate the coagulation and fibrinolysis cascades. Notably, citrullination eliminates their inhibitory activity. Here, we demonstrate that citrullination of antithrombin and t-PAI impairs their binding to their cognate proteases. By contrast, citrullination converts antiplasmin into a substrate. We recapitulate the effects of SERPIN citrullination using in vitro plasma clotting and fibrinolysis assays. Moreover, we show that citrullinated antithrombin and antiplasmin are increased and decreased in a deep vein thrombosis (DVT) model, accounting for how SERPIN citrullination shifts the equilibrium toward thrombus formation. These data provide a direct link between increased citrullination and the risk of thrombosis in autoimmunity and indicate that aberrant SERPIN citrullination promotes pathological thrombus formation.


Assuntos
Antifibrinolíticos/farmacologia , Antitrombinas/farmacologia , Inativadores de Plasminogênio/farmacologia , Inibidores de Serino Proteinase/farmacologia , Trombose Venosa/tratamento farmacológico , Animais , Antifibrinolíticos/química , Antitrombinas/química , Modelos Animais de Doenças , Feminino , Masculino , Camundongos , Camundongos Endogâmicos C57BL , Peptídeo Hidrolases/metabolismo , Inativadores de Plasminogênio/química , Inibidores de Serino Proteinase/química , Trombose Venosa/metabolismo
13.
Biochemistry ; 60(15): 1201-1213, 2021 04 20.
Artigo em Inglês | MEDLINE | ID: mdl-33822598

RESUMO

Antithrombin is unique among serpin family protein protease inhibitors with respect to the major reactive center loop (RCL) and core conformational changes that mediate allosteric activation of its anticoagulant function by heparin. A critical role for expulsion of the RCL hinge from a native stabilizing interaction with the hydrophobic core in the activation mechanism has been proposed from reports that antithrombin variants that block this change through engineered disulfide bonds block activation. However, the sufficiency of core conformational changes for activation without expulsion of the RCL from the core is suggested by variants that are activated without the need for heparin and retain the native RCL-core interaction. To resolve these apparently conflicting findings, we engineered variants in which disulfides designed to block the RCL conformational change were combined with constitutively activating mutations. Our findings demonstrate that while a reversible constitutive activation can be engineered in variants that retain the native RCL-core interaction, engineered disulfides that lock the RCL native conformation can also block heparin allosteric activation. Such findings support a three-state allosteric activation model in which constitutive activating mutations stabilize an intermediate-activated state wherein core conformational changes and a major activation have occurred without the release of the RCL from the core but with a necessary repositioning of the RCL to allow productive engagement with an exosite. Rigid disulfide bonds that lock the RCL native conformation block heparin activation by preventing both RCL repositioning in the intermediate-activated state and the release of the RCL from the core in the fully activated state.


Assuntos
Antitrombinas/química , Antitrombinas/metabolismo , Heparina/metabolismo , Regulação Alostérica , Humanos , Cinética , Modelos Moleculares , Mutação , Ligação Proteica , Conformação Proteica
14.
CPT Pharmacometrics Syst Pharmacol ; 10(3): 199-210, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-33449439

RESUMO

The exposure-response relationship of direct acting oral anti-coagulants (DOACs) for bleeding risk is steep relative to ischemic stroke reduction. As a result, small changes in exposure may lead to bleeding events. The overall goal of this project was to determine the effect of critical formulation parameters on the pharmacokinetics (PKs) and thus safety and efficacy of generic DOACs. In this first installment of our overall finding, we developed and verified a physiologically-based PK (PBPK) model for dabigatran etexilate (DABE) and its metabolites. The model was developed following a middle out approach leveraging available in vitro and in vivo data. External validity of the model was confirmed by overlapping predicted and observed PK profiles for DABE as well as free and total dabigatran for a dataset not used during model development. The verified model was applied to interrogate the impact of modulating the microenvironment pH on DABE systemic exposure. The PBPK exploratory analyses highlighted the high sensitivity of DABE exposure to supersaturation ratio and precipitation kinetics.


Assuntos
Antitrombinas/farmacocinética , Dabigatrana/farmacocinética , Composição de Medicamentos/métodos , Substituição de Medicamentos/métodos , AVC Isquêmico/prevenção & controle , Antitrombinas/efeitos adversos , Antitrombinas/química , Disponibilidade Biológica , Precipitação Química , Dabigatrana/efeitos adversos , Dabigatrana/química , Desenvolvimento de Medicamentos , Substituição de Medicamentos/estatística & dados numéricos , Inibidores do Fator Xa/efeitos adversos , Inibidores do Fator Xa/química , Inibidores do Fator Xa/farmacocinética , Hemorragia/induzido quimicamente , Humanos , Farmacocinética , Segurança , Resultado do Tratamento
15.
Chem Commun (Camb) ; 56(92): 14423-14426, 2020 Nov 19.
Artigo em Inglês | MEDLINE | ID: mdl-33146178

RESUMO

To map the cellular topography of the rare 3-O-sulfated structural motif of heparan sulfate (HS), we constructed quantum dot-based probes for antithrombin and FGF2, which reveal widely different distribution of the targeted HS motifs. The technology helps show that old and young aortic endothelia display widely different levels of the antithrombin-binding 3-O-sulfated HS motif.


Assuntos
Antitrombinas/química , Membrana Celular/metabolismo , Heparitina Sulfato/química , Sulfotransferases/metabolismo , Motivos de Aminoácidos , Animais , Células CHO , Membrana Celular/ultraestrutura , Cricetulus , Células Endoteliais , Fator 2 de Crescimento de Fibroblastos/química , Humanos , Camundongos Endogâmicos C57BL , Imagem Óptica , Ligação Proteica , Pontos Quânticos/química
16.
Anal Bioanal Chem ; 412(28): 7925-7935, 2020 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-32945907

RESUMO

The 3-O sulfate-modified -GlcNS3S6S- monosaccharide in heparin and heparan sulfate glycosaminoglycans (HSGAGs) is a relatively rare yet important modification that facilitates HSGAG-antithrombin binding and subsequent anticoagulant activity. Detecting this modification in complex HSGAG mixtures is a longstanding goal to identify novel 3-O-sulfated HSGAG-protein interactions with biologically significant functions. Tandem mass spectrometry has been applied to HSGAG structural analysis but is limited by the fact that traditional collision-induced dissociation techniques (e.g., CID, HCD) results in extensive sulfate loss prior to generating structurally informative glycosidic and cross-ring fragments. In the present study, we investigated the potential of ultraviolet photodissociation (UVPD) to generate structurally informative fragments from the synthetic heparin mimetic, fondaparinux, under electrospray conditions commensurate with hydrophilic interaction liquid chromatography (HILIC). The two predominant un-adducted precursors, [Fonda-2H+]2- and [Fonda-3H+]3-, were subjected to UVPD, CID, and HCD on an Orbitrap Fusion Lumos Tribrid mass spectrometer and the resulting fragmentation spectra directly compared. Close inspection of the UVPD data identified a unique peak at m/z 417.9425 that matched the Y3/C3 double glycosidic fragment of fondaparinux (i.e., -GlcNS3S6S-). Importantly, the 3-O-sulfated Y3/C3 fragment was generated predominantly from UVPD of the [Fonda-2H+]2- precursor, increased with activation time, and was observable using data-dependent HILIC-MS/MS UVPD analysis of fondaparinux spiked into a semi-complex HSGAG mixture. The discovery of this antithrombin-like 3-O-sulfated fragment provides a potential strategy for screening complex HSGAG mixtures in a data-dependent or data-independent acquisition mode to determine the presence of this therapeutic and biologically significant HSGAG modification. Graphical abstract.


Assuntos
Antitrombinas/química , Fondaparinux/efeitos da radiação , Glicosaminoglicanos/química , Monossacarídeos/química , Raios Ultravioleta , Cromatografia Líquida/métodos , Fondaparinux/química , Espectrometria de Massas em Tandem/métodos
17.
ACS Chem Biol ; 15(8): 2232-2246, 2020 08 21.
Artigo em Inglês | MEDLINE | ID: mdl-32786291

RESUMO

Fucosylated chondroitin sulfate (FCS) oligosaccharides extracted from sea cucumber and depolymerized exhibit potent anticoagulant activity. Knowledge of the antithrombotic activity of different size oligosaccharides and their fucose (Fuc) branch sulfation pattern should promote their development for clinical applications. We prepared highly purified FCS trisaccharide repeating units from hexasaccharide (6-mer) to octadecasaccharide (18-mer), including those with 2,4-disulfated and 3,4-disulfated Fuc branches. All 10 oligosaccharides were identified by their nuclear magnetic resonance structures and ESI-FTMS spectroscopy. In vitro anticoagulant activities and surface plasmon resonance binding tests indicated those of larger molecular sizes and 2,4-disulfated Fuc branches showed stronger anticoagulant effects with respect to anti-FXase activity, as well as stronger binding to FIXa among various clotting proteins. However, both types of FCS 9-mer to 18-mer exhibited molecular size-independent potent antithrombotic activity in vivo at the same dose. In addition, both types of the FCS 6-mer exhibited favorable antithrombotic activity in vivo, although they showed weak anticoagulant activity in vitro. Combining absorption and metabolism studies, we conclude that FCS 9-18 oligomers could remain in the circulation to interact with various clotting proteins to prevent thrombus formation, and appreciable quantities of these oligomers could be excreted through the kidneys. All FCS 9-18 oligomers also resulted in no bleeding, hypotension, or platelet aggregation risk during blood circulation. Thus, FCS 9-18 oligomers with 2,4-disulfated or 3,4-disulfated Fuc branches exhibit potent and safe antithrombotic activity needed for clinical applications.


Assuntos
Antitrombinas/química , Biopolímeros/química , Sulfatos de Condroitina/química , Animais , Antitrombinas/sangue , Antitrombinas/farmacologia , Biopolímeros/sangue , Espectroscopia de Ressonância Magnética Nuclear de Carbono-13 , Sulfatos de Condroitina/sangue , Sulfatos de Condroitina/farmacologia , Cromatografia em Gel/métodos , Cromatografia Líquida de Alta Pressão/métodos , Humanos , Injeções Subcutâneas , Masculino , Camundongos , Tamanho da Partícula , Espectroscopia de Prótons por Ressonância Magnética
18.
Chemistry ; 26(51): 11814-11818, 2020 Sep 10.
Artigo em Inglês | MEDLINE | ID: mdl-32515841

RESUMO

Heparin binds to and activates antithrombin (AT) through a specific pentasaccharide sequence, in which a trisaccharide subsite, containing glucuronic acid (GlcA), has been considered as the initiator in the recognition of the polysaccharide by the protein. Recently it was suggested that sulfated iduronic acid (IdoA2S) could replace this "canonical" GlcA. Indeed, a heparin octasaccharidic sequence obtained by chemoenzymatic synthesis, in which GlcA is replaced with IdoA2S, has been found to similarly bind to and activate antithrombin. By using saturation-transfer-difference (STD) NMR, NOEs, transferred NOEs (tr-NOEs) NMR and molecular dynamics, we show that, upon binding to AT, this IdoA2S unit develops comparable interactions with AT as GlcA. Interestingly, two IdoA2S units, both present in a 1 C4 -2 S0 equilibrium in the unbound saccharide, shift to full 2 S0 and full 1 C4 upon binding to antithrombin, providing the best illustration of the critical role of iduronic acid conformational flexibility in biological systems.


Assuntos
Anticoagulantes/química , Antitrombinas/química , Ácido Glucurônico/química , Heparina/química , Ácido Idurônico/química , Oligossacarídeos/química , Polissacarídeos/química , Anticoagulantes/farmacologia , Antitrombinas/metabolismo , Espectroscopia de Ressonância Magnética , Conformação Molecular , Sulfatos/química
19.
Anal Chem ; 92(11): 7565-7573, 2020 06 02.
Artigo em Inglês | MEDLINE | ID: mdl-32347711

RESUMO

Understanding molecular mechanisms governing interactions of glycosaminoglycans (such as heparin) with proteins remains challenging due to their enormous structural heterogeneity. Commonly accepted approaches seek to reduce the structural complexity by searching for "binding epitopes" within the limited subsets of short heparin oligomers produced either enzymatically or synthetically. A top-down approach presented in this work seeks to preserve the chemical diversity displayed by heparin by allowing the longer and structurally diverse chains to interact with the client protein. Enzymatic lysis of the protein-bound heparin chains followed by the product analysis using size exclusion chromatography with online mass spectrometry detection (SEC/MS) reveals the oligomers that are protected from lysis due to their tight association with the protein, and enables their characterization (both the oligomer length, and the number of incorporated sulfate and acetyl groups). When applied to a paradigmatic heparin/antithrombin system, the new method generates a series of oligomers with surprisingly distinct sulfation levels. The extent of sulfation of the minimal-length binder (hexamer) is relatively modest yet persistent, consistent with the notion of six sulfate groups being both essential and sufficient for antithrombin binding. However, the masses of longer surviving chains indicate complete sulfation of disaccharides beyond the hexasaccharide core. Molecular dynamics simulations confirm the existence of favorable electrostatic interactions between the high charge-density saccharide residues flanking the "canonical" antithrombin-binding hexasaccharide and the positive patch on the surface of the overall negatively charged protein. Furthermore, electrostatics may rescue the heparin/protein interaction in the absence of the canonical binding element.


Assuntos
Antitrombinas/química , Heparina/análise , Polissacarídeo-Liases/química , Antitrombinas/metabolismo , Bacteroides/enzimologia , Cromatografia em Gel , Heparina/metabolismo , Humanos , Espectrometria de Massas , Simulação de Dinâmica Molecular , Polissacarídeo-Liases/metabolismo , Impressão Tridimensional , Soluções
20.
Arch Biochem Biophys ; 685: 108332, 2020 05 30.
Artigo em Inglês | MEDLINE | ID: mdl-32194043

RESUMO

Increased tendency of cancer patients to develop venous thromboembolism (VTE) is associated with high rates of mortality. Elevation of procoagulant proteins and down regulation of naturally occurring coagulation inhibitors appears to form the basis of high risk of VTE in malignancy. A reduced level of anticoagulant protein like antithrombin (AT) will influence both coagulation and angiogenesis, as its cleaved and latent conformations show potent antiangiogenic activity. We show a concentration dependent perturbation in the secondary and tertiary structures of AT conformers exposed to hypochlorous acid (HOCl). Modulated under a very narrow concentration range of HOCl, native AT undergoes oligomerization, aggregation and fragmentation based on spectroscopic, SDS and native-PAGE studies. Factor Xa inhibition assay demonstrated a progressive decrease in inhibition activity of AT on modification by HOCl. Bis-ANS result showed that hydrophobic patches were more exposed in the case of HOCl-modified AT when assessed fluorometrically. Dosage of HOCl-modified AT in experimental animals induced high titer antibodies showing more specificity towards modified forms in comparison to unmodified forms. Auto-antibodies isolated from cancer patients also showed enhanced binding with HOCl-modified AT in comparison to native counterpart. Compared to normal AT, structurally and functionally altered conformation of HOCl-modified AT showed increased immunogenic sensitivity. HOCl modified AT can contribute to prothrombotic and angiogenic environment during cancer progression/development.


Assuntos
Antitrombinas/imunologia , Epitopos/imunologia , Ácido Hipocloroso/química , Adolescente , Adulto , Idoso , Animais , Anticorpos Antineoplásicos/imunologia , Anticorpos Antineoplásicos/isolamento & purificação , Antitrombinas/química , Autoanticorpos/imunologia , Autoanticorpos/isolamento & purificação , Feminino , Humanos , Imunoglobulina G/imunologia , Imunoglobulina G/isolamento & purificação , Pessoa de Meia-Idade , Coelhos , Adulto Jovem
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